SNP Profiles of LCT EEN 90 View Data

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_Input profile	CC	GG	CC	TT	CC	CC	TT	GG	CT	TT	GG	CC	AA	TT
1._LCT_EEN_90	CC	GG	CC	TT	CC	CC	TT	GG	CT	TT	GG	CC	AA	TT
2._GC-08-089-2-12	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
3._GC-08-089-2-12	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
4._GC-08-089-2-12	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
5._GC-08-089-2-12	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
6._GC-08-089-2-12	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
7._GC-08-089-2-12	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
8._GC-08-089-2-12	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
9._GC-08-089-2-12	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
10._GC-08-089-2-12	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
11._GC-08-089-2-12	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
12._LCT_EEN_90	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
13._LCT_EEN_90	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
14._LCT_EEN_90	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
15._LCT_EEN_90	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
16._LCT_EEN_90	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
17._LCT_EEN_90	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
18._LCT_EEN_90	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
19._LCT_EEN_90	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
20._LCT_EEN_90	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
21._LCT_EEN_90	CC	GG	CC	TT	CC	_	TT	GG	CT	TT	GG	CC	AA	TT
22._GC-08-89-2-12	GG	GG	GG	AA	GG	_	AA	CC	_	TT	GG	GG	AA	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	GG	CC	TT	GG	GG	GG	CT	CC	GG	GG	CC	AC	GG
1._LCT_EEN_90	TT	GG	CC	TT	GG	GG	GG	CT	CC	GG	GG	CC	AC	GG
2._GC-08-089-2-12	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
3._GC-08-089-2-12	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
4._GC-08-089-2-12	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
5._GC-08-089-2-12	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
6._GC-08-089-2-12	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
7._GC-08-089-2-12	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
8._GC-08-089-2-12	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
9._GC-08-089-2-12	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
10._GC-08-089-2-12	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
11._GC-08-089-2-12	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
12._LCT_EEN_90	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
13._LCT_EEN_90	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
14._LCT_EEN_90	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
15._LCT_EEN_90	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
16._LCT_EEN_90	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
17._LCT_EEN_90	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
18._LCT_EEN_90	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
19._LCT_EEN_90	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
20._LCT_EEN_90	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
21._LCT_EEN_90	TT	GG	CC	TT	GG	GG	AA	CT	CC	GG	GG	CC	AC	GG
22._GC-08-89-2-12	TT	GG	GG	AA	CC	CC	_	AG	CC	GG	CC	_	AC	_

	29	30	31	32	33	34	35	36	37	38
_Input profile	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
1._LCT_EEN_90	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
2._GC-08-089-2-12	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
3._GC-08-089-2-12	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
4._GC-08-089-2-12	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
5._GC-08-089-2-12	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
6._GC-08-089-2-12	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
7._GC-08-089-2-12	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
8._GC-08-089-2-12	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
9._GC-08-089-2-12	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
10._GC-08-089-2-12	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
11._GC-08-089-2-12	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
12._LCT_EEN_90	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
13._LCT_EEN_90	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
14._LCT_EEN_90	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
15._LCT_EEN_90	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
16._LCT_EEN_90	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
17._LCT_EEN_90	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
18._LCT_EEN_90	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
19._LCT_EEN_90	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
20._LCT_EEN_90	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
21._LCT_EEN_90	AA	TT	CC	AA	CC	TT	GG	CC	AA	CC	X_X	X_X	X_X	X_X
22._GC-08-89-2-12	AA	TT	GG	AA	CC	AA	CC	CC	AA	CC	X_X	X_X	X_X	X_X

Input profile: LCT_EEN_90

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 143 T3

Dapeng Zhang, 2016

1._LCT_EEN_90

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 143 T3

Dapeng Zhang, 2014

2._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

3._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

4._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

5._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

6._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

7._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

8._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

9._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

10._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

11._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

12._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 4 > FP

Dapeng Zhang, 2016

13._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

14._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 6

Dapeng Zhang, 2016

15._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 7

Dapeng Zhang, 2016

16._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 8

Dapeng Zhang, 2016

17._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 9

Dapeng Zhang, 2016

18._LCT_EEN_90

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8212 10

Dapeng Zhang, 2016

19._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 1 > FP

Dapeng Zhang, 2016

20._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8212 2 > FP

Dapeng Zhang, 2016

21._LCT_EEN_90

97.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8212 3 > FP

Dapeng Zhang, 2016

22._LCT_EEN_90 GC-08-89-2-12

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: Nursery, Block: -, Rep: -, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership/ CW

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25